| IATA | ICAO | Airport name | City | Delays |
|---|---|---|---|---|
| TLL | EETN | Tallinn Airport | Tallinn | |
| KDL | EEKA | Kardla Airport | Kardla | |
| URE | EEKE | Kuressaare Airport | Kuressaare | |
| EPU | EEPU | Parnu Airport | Parnu | |
| TAY | EETU | Tartu Airport | Tartu | |
| QUF | - | Pirita Harbour Airport | Tallinn | |
| CHE | - | Tallinn City Hall Heliport | Tallinn | |
| - | EEVI | Viljandi | Viljandi |