| MFT | - | Machu Picchu Airport | Machu Picchu | |
| - | SPNU | Manu | Manu | |
| NZC | SPZA | Maria Reiche Neuman Airport | Nazca | |
| - | SPOR | Minas Buenaventura | Orcopampa | |
| - | SPDO | Mollendo | Mollendo | |
| - | SPEQ | Moquegua | Moquegua | |
| MBP | SPBB | Moyobamba Airport | Moyobamba | |
| - | SPBQ | Nuevo Acari | Bella Union | |
| - | SPON | Orellana | Orellana | |
| - | SPYO | Pacasmayo | Pacasmayo | |
| - | SPPN | Palmas Del Espino | Palmas Del Espino | |
| - | SPPG | Paramonga | Paramonga | |
| - | SPIR | Patria | Patria | |
| - | SPAP | Picota | Picota | |
| - | SPCP | Pucacaca | Pucacaca | |
| - | SPEP | Puerto Esperanza | Puerto Esperanza | |
| - | SPTI | Puerto Inca | Puerto Inca | |
| - | SPPA | Puerto Ocopa | Puerto Ocopa | |
| UMI | SPIL | Quincemil Airport | Quincemil | |
| - | SPQN | Requena | Requena | |
| RIM | SPLN | Rodriguez De Mendoza Airport | Rodriguez De Mendoza | |
| - | SPTE | San Francisco | Teresita | |
| SJA | SPJN | San Juan Airport | San Juan | |
| APE | - | San Juan Aposento Airport | San Juan Aposento | |
| - | SPRF | San Rafael | San Rafael | |
| - | SPRO | Santa Rita De Siguas | Santa Rita De Siguas | |
| SQU | - | Saposoa Airport | Saposoa | |
| - | SPIP | Satipo | Satipo | |
| - | SPSE | Sepahua | Sepahua | |
| SYC | SPOV | Shiringayoc O Hda Mejia | Leon Velarde | |
| - | SPPB | Tipishsa | Puerto Breu | |
| - | SPTR | Tournavista | Tournavista | |
| - | SPIZ | Uchiza | Uchiza | |
| - | SPNP | Ventilla | Puno | |
| - | SPVI | Vicco | Vicco | |
| - | SPYU | Yauca | Yauca | |
| - | SPIY | Yauri | Yauri Peru | |
| YMS | SPMS | Yurimaguas Airport | Yurimaguas | |
| - | SPLS | Zorrillos | Zorrillos | |