| ABU | WATA | Haliwen Airport | Atambua | |
| KDI | WAWW | Haluoleo Airport | Kendari | |
| PKN | WAOI | Iskandar Airport | Pangkalanbun | |
| JIO | - | Jos Orno Imsula Airport | Tiakur | |
| TRK | WALR | Juwata International Airport | Tarakan | |
| KNG | - | Kaimana Airport | Kaimana | |
| BEJ | WALK | Kalimarau Airport | Berau | |
| PSJ | WAMP | Kasiguncu Airport | Poso | |
| KAZ | - | Kau Airport | Kau | |
| KTG | WIOK | Ketapang Airport | Ketapang | |
| LBJ | WATO | Komodo Airport | Labuan Bajo | |
| LLO | - | Lagaligo Airport | Palopo | |
| LUV | - | Langgur Airport | Langgur | |
| LPU | - | Long Apung Airport | Long Apung | |
| SBG | WITN | Maimun Saleh Airport | Sabang | |
| LSW | WITM | Malikus Saleh Airport | Lhoksumawe | |
| RJM | - | Marinda Airport | Waisai | |
| WNI | - | Matahora Airport | Wangiwangi Island | |
| MNA | - | Melangguane Airport | Melangguane | |
| MKQ | WAKK | Mopah Airport | Merauke | |
| MOH | - | Morowali Airport | Morowali | |
| - | WIPI | Muara Bungo Airport | Muara Bungo | |
| PLW | WAML | Mutiara Airport | Palu | |
| NBX | WABI | Nabire Airport | Nabire | |
| NAH | - | Naha Airport | Naha | |
| NAM | - | Namlea Airport | Namlea | |
| NRE | - | Namrole Airport | Namrole | |
| NTX | - | Natuna Ranai Airport | Natuna Ranai | |
| DEX | - | Nop Goliath Airport | Yahukimo | |
| JBB | - | Noto Hadinegoro Airport | Jember | |
| NNX | WALF | Nunukan Airport | Nunukan | |
| LAH | WAPH | Oesman Sadik Airport | Labuha | |
| PXA | - | Pagar Alam Airport | Lahat | |
| PSU | WIOP | Pangsuma Airport | Putussibau | |
| PPR | WIDE | Pasir Pangarayan Airport | Pasir Pangarayan | |
| AMQ | WAPP | Pattimura Airport | Ambon | |
| DUM | WIBD | Pinang Kampai Airport | Dumai | |
| OTI | WAMR | Pitu Airport | Morotai Island | |
| UOL | WAMY | Pogogul Airport | Buol | |
| PUM | - | Pomala Airport | Pomala | |
| TTR | - | Pongtiku Airport | Tana Toraja | |
| TKG | WICT | Radin Inten II Airport | Bandar Lampung | |
| TNJ | WIKN | Raja Haji Fisabilillah Airport | Tanjung Pinang | |
| DOB | WAPD | Rar Gwamar Airport | Dobo | |
| MKW | WASR | Rendani Airport | Manokwari | |
| LUW | WAMW | S. Aminuddin Amir Airport | Luwuk | |
| SXK | WAPI | Saumlaki Olilit Airport | Saumlaki | |
| AMI | WRRA | Selaparang Airport | Mataram | |
| MEQ | - | Seunagan Airport | Meulaboh | |
| - | WIPB | Silampari Airport | Lubuk Linggau | |